meaning we can’t run this locally on our computers?
Replying to “meaning we can’t run this locally on our computers…”:
with the new version you will be able to
Replying to “meaning we can’t run this locally on our computers…”:
as of this week we can: https://www.biorxiv.org/content/10.64898/2026.06.03.729606v1.abstract
Replying to “meaning we can’t run this locally on our computers…”:
check your available (storage) memory before you start
Replying to “meaning we can’t run this locally on our computers…”:
much is required?
Replying to “meaning we can’t run this locally on our computers…”:
1 set of GWAS sumstats run on the 1kgp references is generally ~2GB pre QC
Replying to “meaning we can’t run this locally on our computers…”:
after QC ~.5GB as your base data
Replying to “meaning we can’t run this locally on our computers…”:
for comparision HapMap2 =2.4M snps, HapMap3 =1.3, 1kgp=24M, HRC=44M, TopMed=240M BUT across all after QC only around 8-12M survive MAF and r2 QC