# \#2023
**URL:** https://isgw-forum.colorado.edu/tag/10-tag/10.md
[Latest](https://isgw-forum.colorado.edu/latest.md) · [Categories](https://isgw-forum.colorado.edu/categories.md) · [Tags](https://isgw-forum.colorado.edu/tags.md)
---
## [Glasses found during cleanup](https://isgw-forum.colorado.edu/t/glasses-found-during-cleanup/529)
**Author:** [@dking](https://isgw-forum.colorado.edu/u/dking)\
**Replies:** 0\
**Last updated:** [March 11, 2023, 12:35am UTC](https://isgw-forum.colorado.edu/t/glasses-found-during-cleanup/529 "2023-03-11T00:35:50Z")
Ask Jeff Lessem to retrieve your glasses!
---
## [Hail Workshop Materials](https://isgw-forum.colorado.edu/t/hail-workshop-materials/526)
**Author:** [@dking](https://isgw-forum.colorado.edu/u/dking)\
**Replies:** 0\
**Last updated:** [March 10, 2023, 9:12pm UTC](https://isgw-forum.colorado.edu/t/hail-workshop-materials/526 "2023-03-10T21:12:01Z")
You can find the notebooks: As zip files: Release ibg-2023-final · hail-is/2021\_IBG\_Hail · GitHub As a GitHub repository here: GitHub - hail-is/2021\_IBG\_Hail at ibg-2023-final The slides are also available.
---
## [Bayesian PGI practical](https://isgw-forum.colorado.edu/t/bayesian-pgi-practical/516)
**Author:** [@anonymous17](https://isgw-forum.colorado.edu/u/anonymous17)\
**Replies:** 1\
**Last updated:** [March 8, 2023, 8:47pm UTC](https://isgw-forum.colorado.edu/t/bayesian-pgi-practical/516 "2023-03-08T20:47:21Z")
Hi, Just wondering whether there is any tutorial or practical on Bayesian-based PGI methods. It would be much appreciated if anyone could point out any useful resources on these advanced approaches. Thank you!
---
## [Day 3: Practical for Polygenic Index (PGI) - 11 am](https://isgw-forum.colorado.edu/t/day-3-practical-for-polygenic-index-pgi-11-am/511)
**Author:** [@daniel.e.gustavson](https://isgw-forum.colorado.edu/u/daniel.e.gustavson)\
**Replies:** 0\
**Last updated:** [March 8, 2023, 3:25pm UTC](https://isgw-forum.colorado.edu/t/day-3-practical-for-polygenic-index-pgi-11-am/511 "2023-03-08T15:25:47Z")
Link to PGI practical: https://ucsas.qualtrics.com/jfe/form/SV\_0xO9zBVxPeJVWZ0
---
## [Day 3: Gene-Environment Correlations Session (8 AM)](https://isgw-forum.colorado.edu/t/day-3-gene-environment-correlations-session-8-am/510)
**Author:** [@a.abdellaoui](https://isgw-forum.colorado.edu/u/a.abdellaoui)\
**Replies:** 0\
**Last updated:** [March 8, 2023, 2:27pm UTC](https://isgw-forum.colorado.edu/t/day-3-gene-environment-correlations-session-8-am/510 "2023-03-08T14:27:21Z")
Hi all, You can find the slides for the 8 AM session here: abdel\_rGE\_boulder\_2023.08032023.pdf - Google Drive There will be no practical, just lecture. See you then! Best, Abdel
---
## [Solution to the imputation scripts](https://isgw-forum.colorado.edu/t/solution-to-the-imputation-scripts/508)
**Author:** [@yuchen](https://isgw-forum.colorado.edu/u/yuchen)\
**Replies:** 0\
**Last updated:** [March 8, 2023, 12:29am UTC](https://isgw-forum.colorado.edu/t/solution-to-the-imputation-scripts/508 "2023-03-08T00:29:48Z")
Please run the following line before the “imputationserver …” line check flip --bfile …/raw/myers19 This line does not exist in the web-version qualtrics.txt (https://qimr.az1.qualtrics.com/jfe/form/SV\_eA90nL27Ww43rI…
---
## [Day 2: Population Stratification Session (11 AM)](https://isgw-forum.colorado.edu/t/day-2-population-stratification-session-11-am/499)
**Author:** [@a.abdellaoui](https://isgw-forum.colorado.edu/u/a.abdellaoui)\
**Replies:** 1\
**Last updated:** [March 7, 2023, 5:04pm UTC](https://isgw-forum.colorado.edu/t/day-2-population-stratification-session-11-am/499 "2023-03-07T17:04:12Z")
Hi all, Post any substantive questions about the population stratification under the “Theory and background” channel. Post questions about the practical here (“Logistics”). During the population stratification session,…
---
## [Presentation and practical file availibility](https://isgw-forum.colorado.edu/t/presentation-and-practical-file-availibility/495)
**Author:** [@williams.m.camille](https://isgw-forum.colorado.edu/u/williams.m.camille)\
**Replies:** 1\
**Last updated:** [March 7, 2023, 2:32am UTC](https://isgw-forum.colorado.edu/t/presentation-and-practical-file-availibility/495 "2023-03-07T02:32:01Z")
I apologize if this was already mentioned but are the slides to the lectures and practical sessions already available? If they are, could you remind me where they are located, please?
---
## [Day 1 Genetic Association session](https://isgw-forum.colorado.edu/t/day-1-genetic-association-session/472)
**Author:** [@Wei\_Zhou](https://isgw-forum.colorado.edu/u/Wei_Zhou)\
**Replies:** 0\
**Last updated:** [March 6, 2023, 5:53pm UTC](https://isgw-forum.colorado.edu/t/day-1-genetic-association-session/472 "2023-03-06T17:53:17Z")
The practical session for genetic association tests for common and rare genetic variants can be found here https://github.com/weizhou0/ISGW\_rare\_SAIGE\_hands\_on/wiki/Day-1-genetic-association
---
## [Day1 QC session - practical links](https://isgw-forum.colorado.edu/t/day1-qc-session-practical-links/462)
**Author:** [@daniel.howrigan](https://isgw-forum.colorado.edu/u/daniel.howrigan)\
**Replies:** 0\
**Last updated:** [March 6, 2023, 5:22pm UTC](https://isgw-forum.colorado.edu/t/day1-qc-session-practical-links/462 "2023-03-06T17:22:50Z")
3 ways to view the QC practical session: Qualtrics website with full QC script: https://ucsas.qualtrics.com/jfe/form/SV\_eWpdYL7srw7Cy6W Workshop server access to full QC script: less -S /faculty/daniel/2023/QC/QC\_pra…